Tables and DataFrames

Tables.jl provides an ecosystem-wide interface to tabular data in Julia, ensuring interoperability with DataFrames.jl, CSV.jl, and hundreds of other packages that implement the standard.

DimensionalData.jl implements the Tables.jl interface for AbstractDimArray and AbstractDimStack. DimStack layers are unrolled so they are all the same size, and dimensions loop to match the length of the largest layer.

Columns are given the name of the array or stack layer, and the result of DD.name(dimension) for Dimension columns.

Looping of dimensions and stack layers is done lazily, and does not allocate unless collected.

Example

using DimensionalData
using Dates
using DataFrames

Define some dimensions:

julia> x, y, c = X(1:10), Y(1:10), Dim{:category}('a':'z')

(↓ X 1:10,
→ Y 1:10,
↗ category 'a':1:'z')

julia> A = rand(x, y, c; name=:data)

┌ 10×10×26 DimArray{Float64, 3} data ┐
├────────────────────────────────────┴────────────── dims ┐
  ↓ X Sampled{Int64} 1:10 ForwardOrdered Regular Points,
  → Y Sampled{Int64} 1:10 ForwardOrdered Regular Points,
  ↗ category Categorical{Char} 'a':1:'z' ForwardOrdered
└─────────────────────────────────────────────────────────┘
[:, :, 1]
  ↓ →  1          2         3          …  8          9         10
  1    0.303608   0.351615  0.409982      0.0863477  0.052552   0.811169
  2    0.370339   0.590072  0.0217681     0.19419    0.353535   0.635087
  3    0.883659   0.32162   0.158268      0.459552   0.823538   0.69464
  ⋮                                    ⋱                        ⋮
  7    0.589715   0.288365  0.712813      0.767908   0.440554   0.965807
  8    0.546973   0.14066   0.866663      0.635436   0.394089   0.615224
  9    0.0750317  0.758381  0.883258      0.97869    0.747304   0.398386
 10    0.552699   0.799531  0.198566   …  0.169118   0.193369   0.316881

Converting to DataFrame

Arrays will have columns for each dimension, and only one data column

julia> DataFrame(A)

2600×4 DataFrame
  Row │ X      Y      category  data
      │ Int64  Int64  Char      Float64
──────┼───────────────────────────────────
    1 │     1      1  a         0.303608
    2 │     2      1  a         0.370339
    3 │     3      1  a         0.883659
    4 │     4      1  a         0.218985
    5 │     5      1  a         0.575666
    6 │     6      1  a         0.64193
    7 │     7      1  a         0.589715
    8 │     8      1  a         0.546973
  ⋮   │   ⋮      ⋮       ⋮          ⋮
 2594 │     4     10  z         0.639834
 2595 │     5     10  z         0.626921
 2596 │     6     10  z         0.286008
 2597 │     7     10  z         0.0525759
 2598 │     8     10  z         0.187586
 2599 │     9     10  z         0.279831
 2600 │    10     10  z         0.504085
                         2585 rows omitted

Converting to CSV

We can also write arrays and stacks directly to CSV.jl, or any other data type supporting the Tables.jl interface.

using CSV
CSV.write("dimstack.csv", st)
readlines("dimstack.csv")

2601-element Vector{String}:
 "X,Y,category,data1,data2"
 "1,1,a,0.9607543850887869,0.9219584479428687"
 "2,1,a,0.09650864185913732,0.449490631413745"
 "3,1,a,0.8891938828683675,0.5811306546643178"
 "4,1,a,0.685602900345947,0.1948490023468078"
 "5,1,a,0.09876460914116802,0.3640965349509072"
 "6,1,a,0.1911884115734762,0.022593018091968675"
 "7,1,a,0.12257085597580952,0.1919335094005733"
 "8,1,a,0.4184116379426558,0.45070108749632076"
 "9,1,a,0.2243512965415927,0.3363756904858566"
 ⋮
 "2,10,z,0.06484080285008487,0.5643897112645162"
 "3,10,z,0.433724032114829,0.3153017137323628"
 "4,10,z,0.19753059721378563,0.23686630260817787"
 "5,10,z,0.2079161455707067,0.8940525195972252"
 "6,10,z,0.848784756099022,0.3500239723693068"
 "7,10,z,0.1396477104084779,0.41775558170036053"
 "8,10,z,0.34064364649128265,0.1254773442564282"
 "9,10,z,0.9035243485980183,0.5997889728292368"
 "10,10,z,0.803115940382577,0.3633726250682834"